WATHAR railway station's abbreviated code is WTR. There are approximately 10 trains which depart or passes through WATHAR. Below you will see the list of trains with their arrival and departure timing from WATHAR.
| Train Number | Train Name | Run On | Classes | Schedule Arrival | Schedule Departure |
| 11023 | SAHYADRI EXPRES | MON | TUE | WED | THU | FRI | SAT | SUN | 2A | 3A | SL | 00:58 | 01:00 |
| 11029 | KOYNA EXPRESS | MON | TUE | WED | THU | FRI | SAT | SUN | 2S | CC | 15:13 | 15:15 |
| 11039 | MAHARASHTRA EXP | MON | TUE | WED | THU | FRI | SAT | SUN | 2A | SL | 3A | 19:59 | 20:00 |
| 11040 | MAHARASHTRA EXP | MON | TUE | WED | THU | FRI | SAT | SUN | SL | 2A | 3A | 07:14 | 07:15 |
| 11024 | SAHYADRI EXP | MON | TUE | WED | THU | FRI | SAT | SUN | 3A | 2A | 02:59 | 03:00 |
| 11030 | KOYNA EXPRESS | MON | TUE | WED | THU | FRI | SAT | SUN | CC | 2S | 12:34 | 12:35 |
| 51409 | PUNE KOP PASS | MON | TUE | WED | THU | FRI | SAT | SUN | [] | 12:19 | 12:20 |
| 51410 | KOP PUNE PASS | MON | TUE | WED | THU | FRI | SAT | SUN | [] | 10:29 | 10:30 |
| 51436 | STR PUNE PASSENGER | MON | TUE | WED | THU | FRI | SAT | SUN | [] | 04:59 | 05:00 |
| 51435 | PUNE STR PASSENER | MON | TUE | WED | THU | FRI | SAT | SUN | [] | 21:19 | 21:20 |